DreEX0002362 @ danRer10
Exon Skipping
Gene
ENSDARG00000100818 | CCBL2 (2 of 5)
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr6:25114125-25116573:+
Coord C1 exon
chr6:25114125-25114166
Coord A exon
chr6:25116282-25116346
Coord C2 exon
chr6:25116429-25116573
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTCATCTTTTTAGTAT
3' ss Score
9.12
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGGGAGAATCATTGAAGTATAAGAAGAGGACAGCTGCATGAT
Seq A exon
TATAACATGTCATCCATAAAACACAAAAATGCAAAGAGAATAGAAGGCCTGGACAAGAATGTATG
Seq C2 exon
GGTGGCCTTCACATCTCTGGCTGCAGACCCTACCGTTGTCAATCTTGGACGGGGTTACCCAGACATTCCTCCTCCTTTATATGTGAAAGAGGGACTTGCTCAAGCTGCTCTGGTAGACCAGCTGAACCAGTCCACACGCAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100818-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(14.7=77.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAGGACAGCTGCATGA
R:
AAAGCTGCGTGTGGACTGG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]