DreEX0002527 @ danRer10
Exon Skipping
Gene
ENSDARG00000075723 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr16:40407094-40411958:-
Coord C1 exon
chr16:40411872-40411958
Coord A exon
chr16:40407279-40407362
Coord C2 exon
chr16:40407094-40407198
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATATTCTCTTTTGTCTTCAGCAG
3' ss Score
8.15
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
CAGAGAGAACACCATCATTGCTTGAAAAGACACCATATGCCTCTCTGGCTTATGGTGACCATCAGTTACCAGGCACTCACAGTGACG
Seq A exon
CAGAGGATGTGAATGATTCAGACAGTACGTCTTCTGGCGAGTGCTATCAAAACATTGAGATCGATGCAGATAATCCCCAGAGTG
Seq C2 exon
AAGACGAGGAAAGCCCATCATTTCCTGAGCTGTCAGTCGAGATTCCGCTGACAGGAAACACTGCTGGTTACAGCGGCTGTCATGTACCTGCCGCACACACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075723-'11-15,'11-13,12-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGAACACCATCATTGCT
R:
AGGTACATGACAGCCGCTGTA
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]