DreEX0002786 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2165915-2181100:-
Coord C1 exon
chr5:2180933-2181100
Coord A exon
chr5:2176293-2176316
Coord C2 exon
chr5:2165915-2166052
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCTGCTCTTTCAGAGA
3' ss Score
11.17
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CGGCTCATTTTAAAGCTCAGGAGCATGTGGCTCCGTCTACACCGGCGTCGGCCCGACAGCAGATCCTCATGTCGGCCATCGTCAAATCCCCAGAGCGCCAGCCCAATCCCAGCAGCCTCCTCAACCCGTCCAGCTCAGCCCGCCGCAAGGAGAACTCCACACCGGAGG
Seq A exon
AGAAGAGGAGGGTGACGTTTGAAA
Seq C2 exon
AGTACGGACGGCGTGTAAAGGAGCGAATGCACCACAACATCCCTCATCGCTTCACAGTGGGTCTGAACATGAGAGCTGCTAAATGTACCGTCTGTCTGGACACCGTTCACTTCGGCCGACAGGCGGCCACCTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.963 C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(59.6=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCAGCAGCCTCCTCAA
R:
AGGGATGTTGTGGTGCATTCG
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]