DreEX0002791 @ danRer10
Exon Skipping
Gene
ENSDARG00000089856 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr5:2138899-2142993:-
Coord C1 exon
chr5:2142814-2142993
Coord A exon
chr5:2142264-2142551
Coord C2 exon
chr5:2138899-2140421
Length
288 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTCTCTTCTTTACAGGAA
3' ss Score
12.54
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCCTCATGCTTACGCACACCTGGACATTCCCAACCCGCGCTACCTGGGTCCTGCCATCTCCTCGGGTGCCGTGTATCTGGCCTCGTCCTACCAGAACAAGCTGCGGGTCATCTGCTGTAAAGGCAACCTGAGTCAGGAGGCGGCCAGCGCAGAGATGCAGAGGAACGGATCTACACGCAG
Seq A exon
GAAGAAAAGTGCTTTCTTTATATGTGCGAAGGAGTGACAGCATGAACATTTTAACATTTGACGAATAAAGAGATTTTAAGGAGAATTTTGATTATGAGAGACACTCAATGCTCACGTCATGAACTGTTATATCACTTTATAGCCATTAATGTGTTAAATGCAACGTATTTCTATGGCTTTATCAGCTCTGCTCAACATCAGACTCATTTATAAAGTTATTTAAGAGCATGATTACTGTTAACATGGAGATGATGGATGAAGAAGACACGTTTCTAAATCATTAGAGAG
Seq C2 exon
CCCAAACAAGCGTGGTCCTCCCTCCTACAACGAGCACATCTCCAAGCGTCTGGCTGCGATGCCTGCAGTCCAGGAGGGGCTCCAGCAGCCAGGAACGCCGCACCGCTACCGTGAGGCCCGCACTGAGTTCCGCAGGGACAAATCCCCTGCGCGGCCCCTGGAGCGAGAGAAGTCCCCCGGCCGGATGGAGAGATCGCCCGGACGCATGATGGAGAGATCACCGGGCAGAGTGATGGAGCTGCGCAGGGAGAGATCACCAGGGCGAGCGTTTGAGGAGCCCAGACAGAGACTGCACACGGGATCAGCACGAACACCCATCAACACTGTCAACAAGGTCAGAACACACACCTCACTATCAGACCAACACTGTCAACACGGTCAGAACACACACCTCACAATCAGACCAACACACATCAACACTGTCAACAAGGTCAGAACACACACCTCGCAATCAGACCAACACTGTCAACACGGTCAGAACACACACCTCACAATCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089856_MULTIEX4-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(5.4=24.6)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000122274fB262
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTCATCTGCTGTAAAGGC
R:
CGGTGATCTCTCCATCATGCG
Band lengths:
300-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]