DreEX0002805 @ danRer10
Exon Skipping
Gene
ENSDARG00000104358 | CLASP1 (2 of 2)
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr11:43714148-43716514:-
Coord C1 exon
chr11:43716325-43716514
Coord A exon
chr11:43716189-43716245
Coord C2 exon
chr11:43714148-43714338
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTTCTTCTCTCAGAGC
3' ss Score
11.03
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATTGGTGTGTTGTCATCTGCTATGATGGAGGGCGGCCGGACGGCGCTGGACAACAAGACGTCTTTATTAAACATGCCGTCTCCTCGACCGTGGATGAGAGAATACAACCCGTACAACTACAGTGACTCCATCAGCGCGTATGAGAAAGGAGCGCTCGCAGGGTTTGAGGACACAGAGCAGACACGAGATG
Seq A exon
AGCGTCAGCAGGACAGTGGAGAAAACAAAGTCATGCACCCCAAAGGCTTCTCTGCAG
Seq C2 exon
GGCCGCGGCAGCAGCTGGAGCTGGTTGGTGAGCTGCTAAAGGAGCTGTCCAATCGCAGCGCTCGTGTGGAGGAGAGGCGGGCCGCTCTGCTAGAGCTGCTGAAGGTCACGCGGGACGACAGTTTGAGCGTCTGGGAGGAGCACTTCAAAAGCATGTTACTGCTGCTCCTGGAGACGCTGGGAGATACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104358_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTGAGGACACAGAGCAG
R:
ACCTTCAGCAGCTCTAGCAGA
Band lengths:
137-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]