DreEX0002908 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62745221-62750471:-
Coord C1 exon
chr5:62750277-62750471
Coord A exon
chr5:62747701-62748157
Coord C2 exon
chr5:62745221-62745374
Length
457 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTATGCTTCCCTAAGGAA
3' ss Score
5.97
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
ATCAGTGAGGCTGAGAAGGAGCAGCTCAGACAGGAGCTTCAGAGGAGGATACAGAATCTTGGAGAGCTGAGAGGAGAGATGGAGGCTGTGGAGAAACAGCTGGACAGGCTGAATGCTGAGAGGAATCAAGCTCAGGATGAAATGGAGCAGCTGCAGAATCTGCTGCACAGCCTGGATCCCAGTGACCCCAAACAT
Seq A exon
GAATTAATCATTGCCAACCCATGATGCTCAGCAACAAGTAACAGGCATATAAAATAAGGCGCCTGTCTCTTTAAGAAAGAAGAGAGCACTTCTGTCCTGGGGGAAATCTGTTGATGCTGTGGGTGGAGCCGAAGAGGTTCCTTACTCCCACTCAGCCCGAGTTGTTCAATCTGATTGGCTGAAGCCAGAAGTTTCCTGTGTTGATTCAAAGGGAGCAAAGCGGAGGGTGGACAGAGTGCATTGAAAGAGGAGGAGGGGAGAATGAGGAGGGGGCTACTTGTGGTGATAGCTGGACTTCATGAACAAAAGCTCTGAAGTTTAGAGTAGCCACGCCGAAAAGAGACAGGAAATGCTCTCCTTCTGTAAAAAGAGCTCCCGTTACTCCTTATGGGGTAACAACAGGAGAAAAATGGATATCTAGAGACAGAACTGAAGAGATGACAGGCGCACCGCTGTA
Seq C2 exon
ACCCATGTGAAGGCTCAGTTGTCCAGGAAGTCACAGCTGCTGGCCATCATGAGCAGAAAGCACCAGGAGCTGGAGCGCAGGCTGGATGACATGATCACACGCATCCACAAGGAGACCGAGGAGATCAAAGATCTGGAGCAGCAGCTTACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'14-16,'14-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.577
Domain overlap (PFAM):
C1:
PF101864=Atg14=FE(42.7=100),PF041569=IncA=PD(53.6=92.3)
A:
PF101864=Atg14=PD(0.7=12.5)
C2:
NO
Main Inclusion Isoform:
ENSDART00000163246fB276
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGCTGAGAAGGAGCAG
R:
GCTGCTGCTCCAGATCTTTGA
Band lengths:
337-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]