DreEX0002964 @ danRer10
Exon Skipping
Gene
ENSDARG00000089078 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr21:32059455-32063195:-
Coord C1 exon
chr21:32063109-32063195
Coord A exon
chr21:32062900-32062965
Coord C2 exon
chr21:32059455-32059493
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGCATGGGTTTCACTGACAGGAC
3' ss Score
7.32
5' ss Seq
TTGGTACAG
5' ss Score
0.92
Exon sequences
Seq C1 exon
GGCGAGAGAGGCTCAATAGGAAAGAAAGGTCTAAAAGGACAGAAGGGAGAGCAGGGACCTCCAGGGCTTGATCAGCCTTGTCCTGTG
Seq A exon
GACACCAATGGGTTTAAAGTACATGGTGGGGAGGCAAAGGCCCCATCAGATGCCCCCTGCCCTTTG
Seq C2 exon
GGTCGAGATGGACTGCCCATACCAGAATGCTGGCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089078_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(40.3=86.2)
A:
NO
C2:
PF0139113=Collagen=PD(7.0=38.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGAGAGGCTCAATAGGA
R:
CAGCATTCTGGTATGGGCAGT
Band lengths:
119-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]