DreEX0003122 @ danRer10
Exon Skipping
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21675148-21675558:-
Coord C1 exon
chr24:21675460-21675558
Coord A exon
chr24:21675345-21675364
Coord C2 exon
chr24:21675148-21675261
Length
20 bp
Sequences
Splice sites
3' ss Seq
GTGTATTTTCATTGCTACAGACG
3' ss Score
7.59
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ACACGTGTAAACCAGGAGATGTTTACTGTAATGGTCAGTGCAGACCACACAATCAGTGCAACATCGCATGTGGAGACAGCAGTGAAGAGACTAACTGTG
Seq A exon
ACGTGTGGAAAGCGTTCGTG
Seq C2 exon
GAGGTAAATGCTACCATATGTGCCCAAACAAAATCTGCCTCCAGAAAGCCTCGGTGTGTGATGGAATCGTGGACTGCAAAGACCGCAGCGATGAACTTAACTGCACACGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=89.7)
Main Inclusion Isoform:
ENSDART00000091096fB293
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTGGAGACAGCAGTGAA
R:
CGATTCCATCACACACCGAGG
Band lengths:
103-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]