DreEX0003170 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13425213-13428547:+
Coord C1 exon
chr1:13425213-13425285
Coord A exon
chr1:13425368-13425421
Coord C2 exon
chr1:13428424-13428547
Length
54 bp
Sequences
Splice sites
3' ss Seq
AAGCTGCTGTGCCTTTGTAGCTC
3' ss Score
6.57
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACGGTGACAGAGAAACACAAACTGAACGTTCCAGAGACAATGACGGAAGTTCTGGATGTTTCTGATGAGGAGG
Seq A exon
CTCAACATCAAACCGAGGAGGAGCTTTTTACTGAAGTCTATATGGAGATTGAAG
Seq C2 exon
GGGAAGACACAATGACAGGTGATGGAGGAGAATACCTGAGAGCAGAGGACCTGAGAGAGCTTGGGGACGATTCTCTTCCTGGACATTACCTGGATGGCATGAGCTACACTCATAATCTAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTTCCAGAGACAATGACGG
R:
TCCAGGAAGAGAATCGTCCCC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]