DreEX0003261 @ danRer10
Exon Skipping
Gene
ENSDARG00000016545 | CRAT (1 of 2)
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
Coordinates
chr8:44968536-44973978:+
Coord C1 exon
chr8:44968536-44968658
Coord A exon
chr8:44968815-44968873
Coord C2 exon
chr8:44973843-44973978
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTCTTACTTTATTTTCCTAGGTT
3' ss Score
9.05
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CATGGTCCATGACCTAGATGTTCGAGTGCTCAACTTTTCACAATATGGAAGAAAGTTCCCAAAGTCTCATAAACTGAGTCCTGATGCATTCATTCAAATGGCACTGCAGTTGGCATATTACAG
Seq A exon
GTTGCATGCATGCCTTTTTTGTACCAAATTACCTCTTCGTCAGCATCTTTAAAGATCAA
Seq C2 exon
GATGTATGAGACATGCTGTCCATCCTACGAGAGTGCATCTTTACGCATGTTTAAACTGGGCAGAACAGAAGCCATTCGATCCACCACCACAGAATCGTTGCAGTTCACAAAAGCCATGGATGATCCATCAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016545_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.0=100)
A:
PF0075515=Carn_acyltransf=PD(2.1=50.0)
C2:
PF0075515=Carn_acyltransf=FE(7.7=100)
Main Inclusion Isoform:
ENSDART00000098567fB313
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGGCACTGCAGTTGGC
R:
CTGCAACGATTCTGTGGTGGT
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]