DreEX0003458 @ danRer10
Exon Skipping
Gene
ENSDARG00000100088 | CU915738.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9GXL1]
Coordinates
chr15:37155112-37162838:-
Coord C1 exon
chr15:37162666-37162838
Coord A exon
chr15:37159003-37159038
Coord C2 exon
chr15:37155112-37155340
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTCTCTGCAGCCA
3' ss Score
12.12
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TGAAGGAACCATCGCGTATCATTGGTCTCAGTTTGATGTTCCTGAGATGGACCAGGAGATGGTCCCACAGGTGTCAGAGGAGCGCGTTGTCGAGGCTCTTCGGAGGAGCATCCGGCAGGAGGGCAGACGTGAAGGGAAAGTTGCAGTAACTGCCACCGACATCACTGCTTCAA
Seq A exon
CCACAGACCCTCGGATGGCCAGGGACCCCAACTCTA
Seq C2 exon
AAAACTGCTTTTTCTCTCTCACCGCTGACCCCACCACCAAAGAGTTCTCGTCTCCAGGAAACCCTAAGTCATACCCAGCTTACTCCCGATGCCAGTGGCAGATCCGCGCCAATAAAGGCTCCGCCATCATTGTCAAGTTCAAGACCTTCAACATCGAGGATGACTGTTACAATGACTTTGTGGCGATTTATGACTCTCTAAGTCCTGACCGCTCTCGTGCCATCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100088-'6-6,'6-5,7-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=0.538 C2=0.117
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(41.1=74.6)
A:
NO
C2:
PF0043115=CUB=PU(65.5=96.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGACGTGAAGGGAAAGTT
R:
AGGGTTTCCTGGAGACGAGAA
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]