DreEX0003553 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55532331-55532921:-
Coord C1 exon
chr1:55532841-55532921
Coord A exon
chr1:55532684-55532758
Coord C2 exon
chr1:55532331-55532384
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGTTCTTCACTGAGGGA
3' ss Score
-9.42
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACGAATGAGATGACAGAGCTGCTGTCGGCTCTCTACAAGCACCCGGTTCCTCCGGCCAATGGCTCCATCACGCTGCAGATG
Seq A exon
GGAGCAAAGCTAATGATTGGAAGTGAGATGCCTGGCATATGTGGACACGCCCCTAAAGGGGAGGAGTCAGCAGGG
Seq C2 exon
ATCCCGTACTTTATTGCTCCAGATCCCAAAGCCCTGCCGTCTATTCCGGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.3=100)
A:
PF0214116=DENN=PD(24.7=80.0)
C2:
PF0214116=DENN=FE(9.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATGAGATGACAGAGCTGC
R:
GAATAGACGGCAGGGCTTTGG
Band lengths:
127-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]