DreEX0003646 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19494035-19500783:-
Coord C1 exon
chr16:19500706-19500783
Coord A exon
chr16:19494288-19494420
Coord C2 exon
chr16:19494035-19494162
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTGTCCCAAAACAGATC
3' ss Score
8.3
5' ss Seq
ATGGTACAT
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTTGTCCAGCTGGAGGAGCTTCTGTCTGTTCATCATTCAGTGTTTGTGATTGGTGAGGCCGGGACAGGAAAAAGTCAG
Seq A exon
ATCCTAAAAACTCTTCACAAAACTTACTTCAACATGGGAAGGAAGCCTTTCTGGAATGATCTGAACCCCAAATCAATGAGCAATGATGAACTGTTTGGATTCTTTCATCCTGCCACTCGGGAATGGAAAGATG
Seq C2 exon
GTTTATTGTCACATTTCATGCGGGATCAAGCCAGTAACTCTCACTCAGGGCCCAAGTGGATTGTTCTGGATGGAGACATTGACCCCATGTGGATTGAGTCTCTTAACACCGTCATGGATGACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(9.5=50.0)
A:
PF077289=AAA_5=FE(32.1=100)
C2:
PF077289=AAA_5=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCCAGCTGGAGGAGC
R:
CCATGACGGTGTTAAGAGACTCA
Band lengths:
195-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]