DreEX0004486 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1496059-1499554:+
Coord C1 exon
chr13:1496059-1496220
Coord A exon
chr13:1497090-1497110
Coord C2 exon
chr13:1499384-1499554
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTGCAATATTTTGCTCGCAGTCA
3' ss Score
5.99
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTTTCCAAAAGGACGTGATTGAGTCTCTGCAGAGCCAGTTGCAGGAGTTAAACACTCTTGGCCAGGCGCTGATCCAGAACGCCCCCAAAGGCACCAGCACCAAAAACCTGGATCACGATCTGGAGGAGGTCAACAGCAGGTGGAACACGCTCAACAAAAAG
Seq A exon
TCATAATGTTTGCCAGTGCTG
Seq C2 exon
GTTGCAGAGCGATCAGCACAGCTTCATGAAGCCCTCCTTCACTGCGGACGCTTTCAAGACGCTCTGGAGTCTCTGCTCAGCTGGCTCACAGACACAGAGGAGCTGGTGGCCAATCAGAAACCTCCGTCTGCCGAATTCAAAGTGGTCAAAGCACAGATACAAGAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=1.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(48.6=100)
A:
PF0043516=Spectrin=PD(0.1=0.0)
C2:
PF0043516=Spectrin=PD(8.3=15.8),PF0043516=Spectrin=PU(41.1=77.2)
Main Inclusion Isoform:
ENSDART00000165987fB404
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCAACAGCAGGTGGAAC
R:
AGCTGAGCAGAGACTCCAGAG
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]