DreEX0006140 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28076545-28079574:+
Coord C1 exon
chr6:28076545-28076687
Coord A exon
chr6:28076778-28076988
Coord C2 exon
chr6:28079439-28079574
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTGTGATTTCCACAGCTT
3' ss Score
9.95
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCCATCTACGGAAGGCTGTTTGTGTGGATTGTGACCAAAATCAACAGTGCCATTTACAAACCGCCTTCTGATGACCCCAAACATGTCAGACATTCCATCGGCCTGTTGGACATTTTTGGCTTTGAAAATTTTAAAAACAACAG
Seq A exon
CTTTGAACAGCTCTGCATCAACTTTGCCAATGAGCAGCTTCAGCAGTTCTTTGTGAAACACGTCTTCAAGCTTGAACAACAGGAGTATGCTCGTGAAGACATAGTCTGGAAGAACATCGAATTTAATGACAACCAGAGCACACTCGATGTTTTGGCCATAAAGTCTCTCAACATTCTTTCCCTTATTGATGAAGAGAGTCGCTTTCCTAAG
Seq C2 exon
GGCACAGATGCTACAATGCTCAACAAGATGAATCAGCATCATGGAAAGGGTGATATCTACATGCCACCAAAGAACAATCACGACACACAGTTTGGAATCCGGCATTTTGCTGGAGTTGTCCACTATGACTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(10.3=100)
C2:
PF0006316=Myosin_head=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTACGGAAGGCTGTTTGT
R:
TTGGAGTCATAGTGGACAACTCCA
Band lengths:
276-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]