DreEX0006480 @ danRer10
Exon Skipping
Gene
ENSDARG00000022772 | OSBP2 (1 of 2)
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr5:24108478-24173197:-
Coord C1 exon
chr5:24172989-24173197
Coord A exon
chr5:24171446-24171487
Coord C2 exon
chr5:24108478-24108728
Length
42 bp
Sequences
Splice sites
3' ss Seq
GGAAATGTTTGTGCTTTTAGACA
3' ss Score
4.55
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GACGCAGGCAGAGATGGCCCATACGTGTCGCGGCACTATCAACCTTGCCACAGCGCACATCGACACCGAAGATGCCTGCAATATTGTTCTGAGCAGTGGAGGGCGCACTTACCATCTGAAAGCCAGCACAGAGGTGGAAAGGCAGAGATGGGTCACAGCGCTGGAGCTGGCCAAGGCAAAAGCCATCCGCATGATGAATGATCAGTCCG
Seq A exon
ACAATGGCCACACAGCCTCGCTAACACACTGTTATCAGTCTG
Seq C2 exon
ATGACTCTGCAGACGAGGAGCCCACCTCTCAGTCAGACCACAGTGAGATCCAGGGCACGTTGAAGACTCTGGCCAGTAAACTAGACGATTTGAGCACATGCAATGAGCTGATAGCCAAGCACGGAGCAGCTCTGCAGAGATCTCTGAGTGAGCTCGAAACCTTACGTGTGCCTCTGGAAGGAGGAGAGAAGATAAAGGCTGTCAACGAGAGAGCCACACTCTTTCGCATCACCTCCAATGCTATGATCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022772_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.667 C2=0.308
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(66.7=81.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGGCAGAGATGGGTCA
R:
CTTCAACGTGCCCTGGATCTC
Band lengths:
140-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]