DreEX0007736 @ danRer10
Exon Skipping
Gene
ENSDARG00000098801 | SBNO2 (2 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr2:57101462-57123216:-
Coord C1 exon
chr2:57123129-57123216
Coord A exon
chr2:57106297-57106464
Coord C2 exon
chr2:57101462-57101554
Length
168 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTGGTTATTTTTAGGAG
3' ss Score
8.63
5' ss Seq
CCGGTATTC
5' ss Score
2.42
Exon sequences
Seq C1 exon
GCAGCTCCAGCCGACCCCGTCCTTTATGAATCTGGACCTGTCTGACATAGACTTTCATGAACTTGTGCGGAATGGAGACTTTTCCCAG
Seq A exon
GAGCTGCCATGCACAGACGAGGTGGCATCGCTGTTCTCATCACCATCTGACTCTCTGCTGGAGTACCCAGAACCTTCAGGATTTGGCACTGATAGTCTGGCACAGTTAACTGGCGAGGGTCCTGCAGCACAGATGTACTGGGATATACCTGGACACAGTCAGAGACCG
Seq C2 exon
CTAAACCTGAGCGCGTTTCCTGGCAGGTTGGATGAATTGAACGCGATCCTGTCTCCGTCAGTGGCCGGATTTAAGGCAGGCTCTCCTTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098801_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.696 C2=0.226
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACCCCGTCCTTTATGAAT
R:
AGAAAAAGGAGAGCCTGCCTT
Band lengths:
171-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]