DreEX0007737 @ danRer10
Exon Skipping
Gene
ENSDARG00000098801 | SBNO2 (2 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr2:57126373-57129705:-
Coord C1 exon
chr2:57129535-57129705
Coord A exon
chr2:57126660-57126715
Coord C2 exon
chr2:57126373-57126452
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTTCCTAACTATCACCCTAGTTG
3' ss Score
6.73
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
AGAGATGGCTGACGAATGATGGGGGTTTGACATGTTTCTGGTCGGAGCCTGATGCCCACTCTTGCCACGTCTGTTGTCATGGACACGGAGGACTATCTGCACCCTGAGGGCCCTCAGCTGGGGAGCCCCAAATTCAGCGCTCCCAGTCCTCCTCTCACAAGTTCCATGGAG
Seq A exon
TTGTTCTTAAACCTGGTCTAAAATGAGACAAATCTGGAGTGATTTGTCGTCCAATG
Seq C2 exon
AGTCAGCTGTATCAGCCCAACTCATGGGCGTACTCACAGCAAGCTCAATACAACCAGCACTATCCTATGCAATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098801_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.000 C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000159719fB673
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGTCATGGACACGGAGG
R:
GTGAGTACGCCCATGAGTTGG
Band lengths:
138-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]