DreEX0007797 @ danRer10
Exon Skipping
Gene
ENSDARG00000067801 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr21:2788124-2841849:-
Coord C1 exon
chr21:2841747-2841849
Coord A exon
chr21:2819315-2819385
Coord C2 exon
chr21:2788124-2788257
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGTGTCTCTCTTCAGCCG
3' ss Score
10.13
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ACCTTTAAAGAACTCTCTTCTCCATCTTCATACGTCTGAGACCTGAACTTCCCAAAGCCTCTTTAATGAATCAGTTTTCGCCTCTCGATGCCATGGCGTTCAA
Seq A exon
CCGGCGGCTTTTATAATTGTCTGTGAAGGACGGATCTCCTCGTCTAGTCGAGCGTCGTGGAAGATTCACAG
Seq C2 exon
AGGGAACCTCACGCTGCCAAAGGTGCCGGAGTCCAACATGGCCCTCAGTGTGCTGGGTGTGTTTCTGGGTTTGCTTCTGGAAGTTTCCACGCACGGGCCGTCCAGCGTTCCCAGAAGCTCATGGAAGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067801_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCAGTTTTCGCCTCTCGA
R:
CTGCTTCCATGAGCTTCTGGG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]