DreEX0007858 @ danRer10
Exon Skipping
Gene
ENSDARG00000086539 | SH2D3A
Description
SH2 domain containing 3A [Source:HGNC Symbol;Acc:HGNC:16885]
Coordinates
chr1:58256076-58260654:-
Coord C1 exon
chr1:58260480-58260654
Coord A exon
chr1:58256394-58256424
Coord C2 exon
chr1:58256076-58256192
Length
31 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTGTTTTCCTGTAGGAG
3' ss Score
11.48
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGAATAACTGTACCACCGGCACGATGAGCAGCAGACACTCGCTGGACCTCAAGCGCACTGACCTCTTCCGTCACAGCATCATCCCGAGGCTGCGTCGCCGTGATAAAAGAGTCTCCGCCTCCTGCATCCAGCTCCGCCCTGAAGACCACGCCCCCTGCAGCAAACACAAACCCAG
Seq A exon
GAGGAGGAGTGTGACGGCCTTCATCAGTCAG
Seq C2 exon
GTGTTCTCAGGCCTGAGGGATATGGACGCTCTGAAGAAGGAACTGGAGGAGGAGCTGAAGCTCAGCACTGAAGATCTGAGGAGTCATGCCTGGTATCATGGACAGCTGCAGCGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086539-'2-4,'2-3,4-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=20.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCAAACACAAACCCAG
R:
AGCTGTCCATGATACCAGGCA
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]