DreEX0008561 @ danRer10
Exon Skipping
Gene
ENSDARG00000063713 | SYNGAP1 (1 of 2)
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr19:270483-276595:+
Coord C1 exon
chr19:270483-270694
Coord A exon
chr19:270773-270845
Coord C2 exon
chr19:275957-276595
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTGCAGGTT
3' ss Score
12.27
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTGCGTGAGTACGAGGAGGAGATCAACTCCCTGAAGGAGCGTCTGATGATGTCCCACCGTAAGCTGGAGGAGTACGAGCGACGGCTACACTCGCAGGAGCAGCAGACCAGCAAGATTCTGCTGCAGTACCAGAGCCGGCTGGACGACAGCGAGAGGCGCCTGCGGCAGCAGCAGGTGGAGAAGGACTCGCAGATCAAGGGCATCATCAACAG
Seq A exon
GTTGATGGCGGTAGAGGATGAGCTGAGGGGAAGTGGAATGCCTGACCTCAAAACCAGAATATTCACAGAACAG
Seq C2 exon
CCGATTTATGGTGCCCACTCTGGAACATGATTGGCCCCTGCAGGACTAGAGGACATGTGGCTGAACCTCCACCCAGGAATGTCTGATGATTGGCTGAGAGAGAAGAGAGAGGCGGAGCCAGAGCTGGACGACCAACTTTAACTCTACACACTCTCTCTTTCTTTCTCTTTCTCTCACACACACACATTATGAGAGTATATATATGTTTATGTAACTGATATATAAATATATATTCCTCAGATGTGTCTCTCTCTCTCTCTTTCTCTCTTTCTTCTCAATTTTTGAGCCAAATGGACGACAATCAGCATCTTTGAGGCCGAAACAATCACACTGATAGCACAAAGAAAACCCCGGAGGACAGACTGACGGAGAGGGAGAGAGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTTATGATGCTCTCCTTCTCTTCCCATTATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTGCAGGAGTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063713_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.520 C2=0.590
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(30.6=100)
A:
PF120043=DUF3498=PD(8.7=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAGCAAGATTCTGCTGC
R:
AGGTTCAGCCACATGTCCTCT
Band lengths:
177-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]