DreEX0008689 @ danRer10
Exon Skipping
Gene
ENSDARG00000102404 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr21:139030-141295:+
Coord C1 exon
chr21:139030-139489
Coord A exon
chr21:139562-139585
Coord C2 exon
chr21:139694-141295
Length
24 bp
Sequences
Splice sites
3' ss Seq
GCGCACATCCTCACACACACACA
3' ss Score
-4.65
5' ss Seq
ACACTCTCA
5' ss Score
-28.57
Exon sequences
Seq C1 exon
GATTACCCCATCTCTGACGTTCACTCCATCCTCATTAAAGCTAAAGAACTGCAGGACAGCTTGTAGCCCCGCCCCACAGGCCCCACCCTCTCACAGGCCCCGCCTCCAGGCTGATGATTGACAGCAGTGCCGCCCATCTCTCCGGGTGGGACCCAACGTTTGCCTTGTGTGTTTGAGTTTGGTCTCAGGTAGACGAGTGTGTGTGTGTGTGTGTGATTGAGTGTGTGTGTGCGTGAGTGTGTGTGTGTGTGTATGAAGCACTCCAGATCTCCTGAACGCTCCAGTATGAACAGATCTCAGATCAGAGGATGGTCAGATGATGGACTCCTGTATTTATATCAGTGATTGTTTACGTCTCTGTTGATGAGTGATTATTGATCAGCTGATCAGCTCCGTCACACACCAGCACACCTACTGTCCACAGCTGAAGAACACCACACACTCTCCACACTACACACAC
Seq A exon
ACACATTCAGTCACACAACACACA
Seq C2 exon
ACACACACACACACTGGTTATTCCGCCGTCATGCCACAGTGTGCAGCAGATCTCCCTCTGCTGGGTCTCTGAGGCTGGGTCAGTGTGTTCACAGGTGTGTTGATCAGCTGTTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGACGGACGGACAGATGAAGCTCTTCCTGGTCTCTCTTCACTCTTAATGTTCTGCTCTGTTTTCTTCTTCTGCATGTTTTTGTATGCCGCGTCTGCAGTTCTCTGTTGTATATCCGTGTTTTTACAGCGCTGCAGACGCACAATAAACACACACAACTACACAACCTGCACCTCACTTGACTGTGTGTTCAGGGGGGAATTGTTCCAAGGTGGTGCAGTGGTCAGCACTGTGGTCTCACAGCAAGAAGGTCTCTGTTTCGAGCCTCGGCTGGGTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCCGTGTTGGCGTGGGTTTCACAGTCCAAACACATGCACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102404_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCAGCTCCGTCACACAC
R:
GGCGGAATAACCAGTGTGTGT
Band lengths:
105-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]