DreEX0009131 @ danRer10
Exon Skipping
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41141987-41143975:-
Coord C1 exon
chr24:41143865-41143975
Coord A exon
chr24:41143052-41143133
Coord C2 exon
chr24:41141987-41142137
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCGTATGCTTTTATCCTCAGCTG
3' ss Score
7.38
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTCCTCCTTCATCTGGCTGCACTGTACTATGAGCAGCAGAAGCTGGATTACTGCGAGGAGCTGTGTGTGAAGATTCTGCAGCTCCAGCAGGAACACACTGCAGCCGCAATG
Seq A exon
CTGTTGGCTGATACGTTATATTGGAAGAACCAAAAAGAAGAAGCAGTCAAGATTTATACCAGTATAATGAAGAGAAACCCTG
Seq C2 exon
ACAACTTTCATGCCATGGCCAAGTTTCTACAGATTCTGCGCAGGATGGGGAAACTGGAGGACGCCGTGTCTGTTTTTAATGCTTGCGAAAAGTTCAATCCATTGACACTCAGAGAAGCGGGTTATCAATACTGCAAGGGTCTCTATCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(46.8=78.4),PF134141=TPR_11=PU(7.5=13.5)
A:
PF134141=TPR_11=FE(40.3=100)
C2:
PF134141=TPR_11=PD(49.3=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTTCATCTGGCTGCACTG
R:
TCCTCCAGTTTCCCCATCCTG
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]