DreEX0009164 @ danRer10
Exon Skipping
Gene
ENSDARG00000093403 | TTF1 (3 of 6)
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr5:62656289-62658650:+
Coord C1 exon
chr5:62656289-62656496
Coord A exon
chr5:62658407-62658493
Coord C2 exon
chr5:62658585-62658650
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGATTTACCCCAAAGGAT
3' ss Score
7.46
5' ss Seq
GGCGTAGGA
5' ss Score
-1.24
Exon sequences
Seq C1 exon
GTAAAAGAAGGGGACCGTGGACAACAAAGGAGGTGCAGAGGCTTTTAAGGGCTGTGCGTGACCATGTTGTATCTGTGCTGAAATCTGCCAACCCTAATAAAAAGAGACCGAAAAGAGTCAGTAGAGAAATACTGTACCAAAAATTGCCCTGGACCAAAATTGCTGAGCAGGTGAAAACTCGATGCTGGAACAGATGCAGAGATAAATG
Seq A exon
GATGTCTATACTTACTGCACGGATGTCCCCAGGGATTACATTTAAAGGAAAGATAGCTCAGGAGGCCAAAATCAGACTTATTAGGGC
Seq C2 exon
AATGTATGAAATGCAAGTGGAGGATGCTGTGGATGTCGACTGGGAGGATCTCACAGCTGTTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093403_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF091115=SLIDE=PD(17.7=28.6),PF139211=Myb_DNA-bind_6=PD(25.0=20.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGAAATCTGCCAACCCT
R:
CAGTCGACATCCACAGCATCC
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]