DreEX0009167 @ danRer10
Exon Skipping
Gene
ENSDARG00000094043 | TTF1 (5 of 6)
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr5:62638664-62645213:+
Coord C1 exon
chr5:62638664-62638729
Coord A exon
chr5:62641753-62641838
Coord C2 exon
chr5:62644761-62645213
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTTTTGTCTCATAGGGA
3' ss Score
10.54
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AATGTATGAATTGCAAGTGGAGGATGCTGTGGATATTCCCTGGGAGGATCTCACAGCTGTTTTCGG
Seq A exon
GGATGTCCTTCCATCATTTGTTCAATCAAAGTGGCACCAGCTTAAAGTCTGCTATGTGCCAGATTGGAAAAACAAGTCTTTTGCAG
Seq C2 exon
ACATTGTTGACTTTCTCTATGAGAATGTTTTGCCAGGCCTGGTGAAAGACTGCGAAGACCTTGATGATGATGAACTAAAGGTTGACCAGATGAACAGTTTCCGGCTAGCAGATATTTTTCAGGACATTAACGAGGATGAATGCTGTGACAGTGATGAAGAAACTGGCCAGCAGGAGAAAAGCAGCTCTGCTTAATCAGTTGCAGTCAGTGGAAATATTTGAATGTTTTAAAGAAGAGACGTGTTCAGGTTGTACATAGTTGCCTTTTTATCCTTGTGTTTTTTAATGAATCGGGCAGGAAGTAAACTGCAGTTTTATTGCATTTTAAATGTATTCTGGATATGAAATATGATTCATTTTGTTTGTTAAACAATTGTTTTTACATTCTTAACTACATGGAAACTCACAAGGAATGATCCTTTCCTGTAAGAGCATGCAAACTAAAGAGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094043_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.266
Domain overlap (PFAM):
C1:
PF100704=DUF2309=FE(9.1=100)
A:
PF100704=DUF2309=FE(11.6=100)
C2:
PF100704=DUF2309=PD(18.3=67.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAGTGGAGGATGCTGTG
R:
CTGCTAGCCGGAAACTGTTCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]