DreEX0009170 @ danRer10
Exon Skipping
Gene
ENSDARG00000094107 | TTF1 (6 of 6)
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr5:62598293-62601552:+
Coord C1 exon
chr5:62598293-62598358
Coord A exon
chr5:62600898-62600983
Coord C2 exon
chr5:62601216-62601552
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTCTTTGTCTCATAGGGA
3' ss Score
10.27
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATGTATGAAATGCAAGTGGAGGATGTTGTGGATGTTGACTGGGAGCATCTTACAGCTGTTTTTGG
Seq A exon
GGATGTCCCTCCAGCATATGCTCAATCAAGGTGGCACCAGCTTAAAGTCTGCTATGTGCCAGATTGGCAAAACAAGTGTTTTGGAG
Seq C2 exon
ACATTGTTGACTTTCTCTACGAGAACACTTTGCCAGGTCTGGTAAAAGAGTGCAAAGATCTTGATGATGATGAACTTACGGTTGACCAGATGAACAGCTTCCGGCTAGCAGATATTTTTCAAGACATTAATGAGGATGAGTGCTGTGACGATGATGAACAGACTGGCCAGCAAGAAAACAACCACTCGTCTTAATCAGCTGTATAGATGAATTGTGAGAAGTCAATCTAAATATTCCAGTGACTTAAAGAAAATTTTAGGTTGTACATATATTTTTTTTTATTCTTGTGTTTTTCAATGAGTTGATCAGTAAATAAATTCAAGTTCTAATGCATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094107_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.266
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGGAGCATCTTACAGCT
R:
TCGTCACAGCACTCATCCTCA
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]