DreEX0009691 @ danRer10
Exon Skipping
Gene
ENSDARG00000075545 | ZNF646 (2 of 2)
Description
zinc finger protein 646 [Source:HGNC Symbol;Acc:HGNC:29004]
Coordinates
chr19:5226451-5230740:+
Coord C1 exon
chr19:5226451-5226546
Coord A exon
chr19:5228859-5229183
Coord C2 exon
chr19:5229589-5230740
Length
325 bp
Sequences
Splice sites
3' ss Seq
CTGTGGCATGTTCTTTGCAGATC
3' ss Score
9.55
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
Exon sequences
Seq C1 exon
CTGTCCTCTGATGCCCCACATCTGTCCAGACCCTCTCTGAACTGCTGTGATCGAGTGGAATTGAAAGGCTGATTGGAGAGAATATCTGTCACCCAG
Seq A exon
ATCGCCATCACCTGATCACTCACCTGTGTCCAGGCAAGGCGAGATCGGGGGCATTGAACAAGGGTATGAATGGAGCTAAAGGGATGACGGGTGGTGCTGGTACCAGTGGCAGCGGAGGCCCTGTAAACCCTCAGCAGATGTCAGGCTCTGTTGATCGGCCCCACAGGTGCGACCAGTGTGGAAGGAGTTACAGACACCCCTGCTCCCTGCTCAACCATAAGAAATCTCACAAGACTGGGGTCTTCCGCTGCCTTGTCTGCCAAAAACGCTACTACAACCTACTGGCTCTCAAGAACCACCAGAGGACTCATTTTGACTTAAAGAG
Seq C2 exon
ACACAAGTGTGAGGAGTGTGGGAAGGCCTTCAAGATTCAGAAGCAGTTAATAAATCATCTACGCCTGCACGAAGAGCACAGAGCAAAGACTGGAGAGCGAGACCAAAGAGTTCAAAGCATGTCTCATCCCAATGGAGCCCACTATGAAGGAGGCCCTTCGCAGCTACAAGCTATGAGGATGGGTGAACCCAAAATGCAGAATCCTCCCATGAACCCCAATTATGGTCAACCTCAAGATTTCAAAAAACCATACGCGGGGGCGAGGGCACAGCAGATTGATGATGGCAGCGGTCGCCGCCCCTTTGCTTGCGATCAGTGTGGACGTACTTACCGTCATGCTGGCAGTCTGGCCAATCATAAGAACCTTCATAAGATCGGCGAATACCACTGCAATGTGTGCAATTCCACTTATCCAAATCGACTGGCAATGAAGAATCACCTTCGAATGCATTTCGCTCTCAAGAAATTTACCTGCACTGAATGTGGAAGGGGCTTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075545_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.534 C2=0.301
Domain overlap (PFAM):
C1:
PF089965=zf-DNA_Pol=WD(100=8.2),PF0009621=zf-C2H2=WD(100=2.7),PF138941=zf-C2H2_4=WD(100=2.9),PF121713=zf-C2H2_jaz=WD(100=3.0),PF139121=zf-C2H2_6=WD(100=3.1),PF089965=zf-DNA_Pol=WD(100=7.7),PF0009621=zf-C2H2=WD(100=2.7),PF128742=zf-met=WD(100=2.9),PF139121=zf-C2H2_6=WD(100=2.9),PF0009621=zf-C2H2=WD(100=2.6)
A:
PF0009621=zf-C2H2=WD(100=26.4)
C2:
PF0009621=zf-C2H2=WD(100=6.0),PF0009621=zf-C2H2=WD(100=6.0),PF138941=zf-C2H2_4=WD(100=6.5),PF121713=zf-C2H2_jaz=WD(100=6.0),PF121713=zf-C2H2_jaz=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF0009621=zf-C2H2=WD(100=5.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTCTGAACTGCTGTGA
R:
CGCTGCCATCATCAATCTGCT
Band lengths:
357-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]