DreEX0009700 @ danRer10
Exon Skipping
Gene
ENSDARG00000095745 | ZNF70 (3 of 16)
Description
zinc finger protein 70 [Source:HGNC Symbol;Acc:HGNC:13140]
Coordinates
chr22:1268284-1273241:+
Coord C1 exon
chr22:1268284-1268375
Coord A exon
chr22:1268566-1268629
Coord C2 exon
chr22:1272431-1273241
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTATGTACATTTTACTTAAGGAC
3' ss Score
4.62
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GAGAGATTTCATTCAGCGGAGCTTATCTGAGTGACAAACTTTGTTTCATGTATAATTCCACTAATGTTTCGAGAGTTGTGTGTTCATTTAAA
Seq A exon
GACAGTGAGAAAATGAGGGATCTAGAAAAATCCTTCAAAGCTGGAGAGACTGAAGAATGAACAG
Seq C2 exon
ACTTTATTGAAGAGAGCGAAGATGATGAACCTGTAAAAGCCGAGAAAATCCCTCATTTATTGACTGAAGATATTTTTAATAATGAAAAGAAAAGACAAGAAGTGTTTCACCTGCACTGAGTGTGGGAAGAGTTTGGGATCCAAACACTGTCTCCAGCTTCACATGAGGATTCACACTGGAGAGAAACCGTACACATGCACTGAGTGCGGGAAGAGTTTCAGACAATCATCAGCGCTTAAATCACACATGCTGATCCACACTGGAGGGAAACCGTACACATGCACTCAGTGTGGGAAGAGTTTCAGACATTTATCAAACTTCAAAAAACACATGCTGATCCACACTGGAGAGAAACCGTTCACATGCACTCAGTGCGGGAAGAGTTTCAGTAGATCAACACACTTTAATGAGCACATGATGATCCACACTGGAGAGAGACCACACACATGTGATCGATGCGACAAAACGTTTTTGAGGGCTGCAGACCTGAAGATCCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095745-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0041217=LIM=WD(100=12.3),PF134651=zf-H2C2_2=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=10.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCGAGAGTTGTGTGTTCA
R:
TCAGTGCAGGTGAAACACTTCT
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]