DreEX0009912 @ danRer10
Exon Skipping
Gene
ENSDARG00000013500 | abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]
Coordinates
chr5:24655839-24660222:-
Coord C1 exon
chr5:24660059-24660222
Coord A exon
chr5:24659267-24659334
Coord C2 exon
chr5:24655839-24655939
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTGCGTCTGACGTCATCCAGGTT
3' ss Score
6.32
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TGTGACTCAATTGCTGGAAAGGATAAGTGAAGTTGTGGAGCAGAATCACTTGTTTACATCAGACAGGCCCAGTCTGGGAGAGGAGCTGGAGTCTCTGCAGCAGCACCTCGAAAGTCTGAGCTCAGCACAAGGCCCTCTAGAGAGCCACTACAACACCAGCCACG
Seq A exon
GTTCACGTACGTGCTCATGCTTCATTCGTTTTTTTCAAGATGGCGGATCGGCCTCGCTTCACACTACA
Seq C2 exon
CAGACTCCAGCTCGTGACGATCCCACATCCGACTACTCACTGTCCTTCACTTACTTCCCAGAGCACCTCACCTTGAAGAAGAGCACCGTTTACACCCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013500-'5-8,'5-7,6-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGAGCTGGAGTCTCTG
R:
ACGGTGCTCTTCTTCAAGGTG
Band lengths:
177-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]