DreEX0009913 @ danRer10
Exon Skipping
Gene
ENSDARG00000013500 | abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]
Coordinates
chr5:24667012-24670620:-
Coord C1 exon
chr5:24670527-24670620
Coord A exon
chr5:24670357-24670359
Coord C2 exon
chr5:24667012-24667634
Length
3 bp
Sequences
Splice sites
3' ss Seq
CTGTAATGATGTTGAGTGAGTGT
3' ss Score
-20.55
5' ss Seq
TGTGTCAGT
5' ss Score
-2.28
Exon sequences
Seq C1 exon
TGGGTTCTTGCATTTGAGATTTTCATCCCATTGGTGCTCTTCTTCATACTCCTGGGCTTGCGGCAGAAGAAGCCAGCCATTCCAGTCAAAGAAG
Seq A exon
TGT
Seq C2 exon
TGTGTAAGTCAAAATGGTTGTTTTTTGTATGTTTGTGTGTATCTGAATCCTTAACTCTTTTGGGGGTTTGTGGGATCATTCCACTGTGTGTCTCTAATTGTGAGTGTGTGTTTTTCCTTGAGCTCTAATGTGTTTATTGTGCTGCTATTGTGTATTTGTCATGTCAACTGTTTATGCATCAATCTAATGGTAAAAGGGCCCATATAACTCAAACACTATGTGCTTACTGGAACTCACCTGACATGACGAAACAAATAACATTGCAACATAACCAGGTGTGATGTAATAAAACTGCAGCAACAATACATTTGTGTGTCATAATTGAGAAGTATCATATCGCAAAAAAGGAAAAAAAAACCAAGGAAACTTTTCTATGACTTTTAATATTAAATTAATTTTATTTGGATACTATACTATACTATATGCCTGCAGAACATTTCAAATTGGTGTTATTTATATATAATATTTGCATAAACCCTTAATTTATGACATATCTGCATTACAGTGACTTATTATGGTCATTAAAGACCAGGTAATGCTTTTCATTTAGGGCTGCAACCAACGATTATTTTAATAATTGATTAATCTGTCGAATTATTTCTTCATTAATTAATGAATTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013500-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000162774fB873
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGCCATTCCAGTCAAAG
R:
GGAATGATCCCACAAACCCCC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]