DreEX0009924 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12520449-12524817:+
Coord C1 exon
chr3:12520449-12520758
Coord A exon
chr3:12520929-12520948
Coord C2 exon
chr3:12524559-12524817
Length
20 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTGTTTATGGAAAGCGT
3' ss Score
3.66
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCCAGACTGTATATGCAGCAGTTCTACGCCATGTTCCTGAAGAGGGCGCTCTACAGCTGGCGCAACTGGAAAGTGATGGTGGCTCAGTTTCTGGTGCCGCTCATCTTCACAGTGTTGGCCCTCGTAGTGGCCCGTAGCCTGCCCAGCAGCCATTCTTCACCACAGCTCCGCCTGGCGCTAAAACAATACGGCCAAACCCATGTACCTGTTGCTGTTGAAGCTAACGCCGGGCCACTGGCTTCACTTCTGGCTGAAATCTACACCACACAGCTGCCTTCCCAGAATGCCATTGCTGCACCTAATATAACAG
Seq A exon
CGTCCATTTACGAGTGCCAG
Seq C2 exon
ATTTCTCGGAGTATGTGCTTTATAATGCTCAGAGGGAGGGCGGAGCTTTCAACGAGCACTGTGTGGTCGGCGCCGCTTTCAGAAGCAGTGATGTTATCGGATACTTCAATAATCAGGGCTATCATACACCCGCGACAGCGCTCATGCTGGTGGACAACGCTCTCTTCAAGCTCCTAGCCGGACCCAATGCCTCCATCCAGACTGGAAATGACCCCATGCCACGCAATGTGTCCGAGACGGCCCAGAGCCAGCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'23-23,'23-22,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(20.4=77.9)
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(21.6=100)
Main Inclusion Isoform:
ENSDART00000159252fB875
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAGAATGCCATTGCT
R:
GACCACACAGTGCTCGTTGAA
Band lengths:
105-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]