DreEX0009934 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28543262-28545580:+
Coord C1 exon
chr24:28543262-28543316
Coord A exon
chr24:28543442-28543516
Coord C2 exon
chr24:28545408-28545580
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGTTGAACCCCTTAGACG
3' ss Score
2.4
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GTGTTTCTTAAAGTGACTGCTGATGGAGAGGCTGCTCACATCAATACGGCATCTG
Seq A exon
ACGTCAGAATCCTCCAACAGAAATCTCTTGCGAGTCTCTATAGAGACAACACAGTCAAAGTGAATATAGAAGAAG
Seq C2 exon
ATACAGATAGATCACATGCTAACGGCCAGTCAAACTCTGCAAATGTAATCAGCAAAGAGGGCAGAGGATCCCAGCAGGTGAAGGGTTTTTTTCTGGTTGTGAAGCAGTTTTTCGCTCTTCTCATTAAGAGGTTTCATCACACCACGCGCTCCGGCAAAGACTTTCTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'32-31,'32-30,33-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.115 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000136772fB876
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAGGCTGCTCACATCA
R:
GCGTGGTGTGATGAAACCTCT
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]