DreEX0010423 @ danRer10
Exon Skipping
Gene
ENSDARG00000019207 | abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-081104-23]
Coordinates
chr5:24528771-24533654:-
Coord C1 exon
chr5:24533580-24533654
Coord A exon
chr5:24532822-24532898
Coord C2 exon
chr5:24528771-24528806
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTGCAAGTGTTTTTACACAGAGT
3' ss Score
3.82
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AACAATACTTAAGTCAAGAGGAATGAAACTTAAAGTCTTATCTCTACTCATACTGACTGGCTTCTGTCTAACTGG
Seq A exon
AGTGACACGTTTAAGAGTACTACAAGCATTTCTTGAAGAGACATTAGGAAGCGTACACTATGGCTCAAAAGTTTGGG
Seq C2 exon
ACTCCTTTATCTGGGCTTCACCTCTGGATGGATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019207_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF034148=Glyco_transf_6=PU(1.8=38.5)
Main Inclusion Isoform:
ENSDART00000027237fB929
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGAGGAATGAAACTTAAAGTCT
R:
ATCCATCCAGAGGTGAAGCCC
Band lengths:
96-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]