DreEX0010542 @ danRer10
Exon Skipping
Gene
ENSDARG00000035891 | acana
Description
aggrecan a [Source:ZFIN;Acc:ZDB-GENE-050208-221]
Coordinates
chr7:48507681-48508623:+
Coord C1 exon
chr7:48507681-48507784
Coord A exon
chr7:48508114-48508162
Coord C2 exon
chr7:48508510-48508623
Length
49 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTGTTTTTGTTCAGCTG
3' ss Score
8.82
5' ss Seq
CTGGTACAT
5' ss Score
4.22
Exon sequences
Seq C1 exon
CCCATGTGAACCAAACCCTTGTGGAGCTGGTGTGTGTTCAGTGAAGGATGGAGTGGGACTTTGTCACTGCCCACCTGGACTGCATGGAGAAGAGTGCCAGTTTG
Seq A exon
CTGTGCCTTTGCTGCAGTCTGGTTTAATCAGCACGCCTGCTAACATCTG
Seq C2 exon
AGGTTGATGTATGCCATTCAAACCCTTGCGCCAATGGAGCCACCTGTGTGGAGGTAGAGGACACTTTCAAATGCTTATGTCTGCCCAGCTACGAAGGAGACCGGTGTGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035891_MULTIEX1-1/2=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=85.7)
A:
NO
C2:
PF0000822=EGF=WD(100=79.5)
Main Inclusion Isoform:
ENSDART00000005288fB934
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCATGGAGAAGAGTGCC
R:
AGTCTCACACCGGTCTCCTTC
Band lengths:
140-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]