DreEX0012131 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1587469-1593709:-
Coord C1 exon
chr9:1593652-1593709
Coord A exon
chr9:1592663-1592676
Coord C2 exon
chr9:1587469-1587590
Length
14 bp
Sequences
Splice sites
3' ss Seq
ATTCATTCAATTCTTTTCAGATT
3' ss Score
7.81
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CACGCAGCCCGGGAGGAGATTCTAGCCAACGGAGGGAGTCTGTCGCACCACCACGGAG
Seq A exon
ATTGGATCAGTCAG
Seq C2 exon
TGGGAAAACTCCGCAAGGAATGGATGAAGGAGAGTGTGTCCGGCGTCGGCCTCGGCATGATCCAGTCCGTCAAGGAGTTTGTGGACCCACAGAACATCTTCGGGAGCAGAAACCTGTTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(6.9=100)
A:
PF0291314=FAD-oxidase_C=FE(1.7=100)
C2:
PF0291314=FAD-oxidase_C=PD(13.9=92.7)
Main Inclusion Isoform:
ENSDART00000167647fB1093
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGGAGATTCTAGCCAAC
R:
CCGGACACACTCTCCTTCATC
Band lengths:
92-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]