DreEX0012340 @ danRer10
Exon Skipping
Gene
ENSDARG00000001950 | ak1
Description
adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
Coordinates
chr5:70934666-70948273:-
Coord C1 exon
chr5:70948141-70948273
Coord A exon
chr5:70935693-70935698
Coord C2 exon
chr5:70934666-70934701
Length
6 bp
Sequences
Splice sites
3' ss Seq
CCTAAACCCAACCATCACAGGAG
3' ss Score
2.05
5' ss Seq
ACAGTGCAG
5' ss Score
-8.91
Exon sequences
Seq C1 exon
AGCCTCAGCGCTCTATATAAAGCGGTGGTGGGCAGAGGAGGGCAGCCGTGCAGCGGGTCACGCAGACTGAGAGGAGCCGGACACACTTCAGCGGACACACACACCCACACTGACAGAGAGAGAGAGAGAGAGA
Seq A exon
GAGACA
Seq C2 exon
CAGGATAATCTCTCATAACACAGACAGCCATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001950-MICROEX1-2/3
Average complexity
MIC-M
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGAGCCGGACACACTTC
R:
CTGCCATGGCTGTCTGTGTTA
Band lengths:
101-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]