DreEX0013096 @ danRer10
Exon Skipping
Gene
ENSDARG00000043313 | ank2b
Description
ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
Coordinates
chr7:57653974-57657572:-
Coord C1 exon
chr7:57657500-57657572
Coord A exon
chr7:57657193-57657246
Coord C2 exon
chr7:57653974-57654115
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAACATGGGATTTCCTGCAGTTC
3' ss Score
6
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ACAGTGACAGAGAAACACAAACTAAATGTGCCAGAAACCATGACAGAAGTCCTTGATGTGTCTGATGAAGAGG
Seq A exon
TTCGGAGGCTGGTAGATGATGGTGCGATGTCAGATGACTCTATTGATTTTGAAG
Seq C2 exon
GTGATGACACTATGACAGGTGATGGTGGTGAATATTTGAGAGCAGAGGATTTGAGAGAATTAGGAGATGATTCACTACCTGGCCAGTACCTGGATGGCATGAACTACCTGCGGTTCAGTTTAGAAGGAGGCAGATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043313_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.684 C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000147287fB1178
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCCAGAAACCATGACAGA
R:
AGGTACTGGCCAGGTAGTGAA
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]