DreEX0013116 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20743142-20748831:-
Coord C1 exon
chr17:20748759-20748831
Coord A exon
chr17:20748441-20748479
Coord C2 exon
chr17:20743142-20743265
Length
39 bp
Sequences
Splice sites
3' ss Seq
GTGTACTGTATGTTTGACAGCTG
3' ss Score
7.85
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CCAATAACTGAGAAACACAAGATCAATGTTCCGGAGACAATGAATGAGTTCCTCGACATGTCCGATGACGAAG
Seq A exon
CTGTGAAAGATCATGAAGCTCAGACTGTTGGGGAAGAAG
Seq C2 exon
GTGAAGATGCGATGACCGGAGAGACTGAGAAGTACCTTCGGCCACAGGACCTTAGGGAGTTGGGGGATGATTCCCTGCCGCAGGAGGGGTACATGGGTTTCAGTATTGGAGCCCGCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=1.000 C2=0.690
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTCGACATGTCCGATGAC
R:
TGAAACCCATGTACCCCTCCT
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]