DreEX0013141 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7654407-7658542:-
Coord C1 exon
chr12:7658440-7658542
Coord A exon
chr12:7655382-7655426
Coord C2 exon
chr12:7654407-7654513
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCAAATGCTTCAGGGG
3' ss Score
7.23
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
CCTGCGCTCCTTCAGTTCGGATAGGTCCAACACTCTCAACCGGAGCTCCTTCGCCCGCGACAGCATGATGATCGAAGAGATCCTGGCGCCCACCAAGGACACG
Seq A exon
GGGGTCTGTAGAGACATGCCCACCCTTGTTGACTCTCATTATAAG
Seq C2 exon
CACCTGGCCTTAGCGAAAGATTACAACACGGACTCAATGAGACGTTACAGCTGGACGCCAGATACTATGGACAATGTGAACCTGGTCTCCAGTCCTGTCCATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.067 C2=0.087
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079115=ZU5=PU(1.0=2.8)
Main Inclusion Isoform:
ENSDART00000088100fB1185
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACTCTCAACCGGAGCTC
R:
CGTCCAGCTGTAACGTCTCAT
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]