DreEX0014324 @ danRer10
Exon Skipping
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15485662-15495163:+
Coord C1 exon
chr2:15485662-15485805
Coord A exon
chr2:15494446-15494451
Coord C2 exon
chr2:15495067-15495163
Length
6 bp
Sequences
Splice sites
3' ss Seq
ACTGCAAGTGCAAGTCAAAGGAG
3' ss Score
-11.17
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAGTCAAGAGTGCTCGCAGCACGTGGTGAATGAGCGTCTTGGGGAGTTGGTCCACGTGTTGAAGGCCGTCATTGGCAAACACCAGGCACTGAACTCATCCGAAATCCTTGGTGCCGCGGGGACTGTTATTGCTAAAGTCAAAG
Seq A exon
GAGTTG
Seq C2 exon
GCGTGAACTTCAAGGAAGTTAATAACGAAAATAAAAGCACAATATTTGGCGAGATACACACGTCGATTGACACTTTGGCATTCACCTTTGGCAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000016071fB1275
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGGGACTGTTATTGCTAA
R:
CGACGTGTGTATCTCGCCAAA
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]