DreEX0015010 @ danRer10
Exon Skipping
Gene
ENSDARG00000074329 | arvcfa
Description
armadillo repeat gene deleted in velocardiofacial syndrome a [Source:ZFIN;Acc:ZDB-GENE-091113-43]
Coordinates
chr10:501809-503725:+
Coord C1 exon
chr10:501809-501885
Coord A exon
chr10:502873-502969
Coord C2 exon
chr10:503220-503725
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACACTGTGTTTGTCTTTCAGGGT
3' ss Score
12.48
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
ACGGATACTGCAGCGTGGATCAGCCAGAGAGAGCAGGAGACGCTCCCTGCCACATGATCGAACGAGAAACTTTTCAG
Seq A exon
GGTGTGAATGATAAGAGGCACTTCATCAGGACCAGCAGGCCGGCGGTGGGCTTAGTGGAGCGGACCCCTCAGCCGCTGGACTCCTGGGTCTGAACTG
Seq C2 exon
GCTGCAGATCCACATTGACAGACGCGACCAGCCTTCAGCACAATCAAACCAGAGAAAATCAGCAGATCATCATGTGTTCATCATCCACACCAACAGAAGCTGGAGGAACGGCGTCGAGATCGTCTGGAAGTGGACTTTGACTCTTTGCTGCTTTTGGCAATCTTCACTGTTAAACTCAAGATTCATGATGTGAGCAGTCGTCTGGAGATCTGATAATCCGCCATATTATGATCTTGTGTTGTTTCTATGCTTTCCTTTCCTTTGTTTTCTTTGTTGACGAGTCTCTAAAGTGTATAGTAAGTGTTCCGGATGTTTCTGTGATTAACCTCATGGACCATTTCAGTTCTCTGTCTTATGTTTTATGCACAAAAGAAATGATATCATGATATATGATGAATATGAGTAGATCATGGGGCTAAAATTCACATTAAAAAATACTGTAGTAACTTACGGTAAACACTGCAGTGTTTTTGAAGCGTACAGTAGTACAGTACAATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074329-'16-15,'16-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.233 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGCCAGAGAGAGCAGGA
R:
CGTTCCTCCAGCTTCTGTTGG
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]