DreEX0015027 @ danRer10
Exon Skipping
Gene
ENSDARG00000061688 | arvcfb
Description
armadillo repeat gene deleted in velocardiofacial syndrome b [Source:ZFIN;Acc:ZDB-GENE-060526-60]
Coordinates
chr5:25659960-25674451:-
Coord C1 exon
chr5:25674360-25674451
Coord A exon
chr5:25668859-25668971
Coord C2 exon
chr5:25659960-25665592
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGATTTGAACCCCTTTGCAGAAT
3' ss Score
7.98
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATGGCTATTCCACGATTGACCAGCGAGACAAAGACTCCAAGTACAAAAGCAGTGACATCTCGTCGGATCTGCAGGAGCGGGAGCCGTTAAAG
Seq A exon
AATGACACAAATAGGAAACACTATATCAGGAGCAACAGGCCGACTGTCAGTCTGGTGGATGCTTGTGATGTTAAACCTCAGCCTGTTGACTCCTGGGTCTAAATGCATGCATG
Seq C2 exon
GCTTAGCTAGCAACAGCGCTACATCTTTACCACGAGTCACCACTGCCATTAACCGCAGAGCTCACCGTGATGTGGACTCATCTCAAGACTTTTACCTGAAAGAGCGAGAGACTTTCATTCAACAGCCAATATTTTGAGATTTCTCAACAAGTGAAAAGAAAAAGAAGCCACTTCTCATGTGTACATTCCCACTGGATGTAGTGTTTCCCAGAACTAAGGATTAGCCGGAATGATGGACAGATGGACAGATGGATTGAGTGAATATACAGAAAGTGCTGTCGTGGACGTGGACGTGTGCTGGATTGAGGGGTGAAGAGGATATCAGAGAAAAAAAAAAAACTATTTTTATGTCAAAACAAAAATATATATATATATAATTTTTGCCTATATTATTTTTGTTGTCCGTTTCTGCCTGATTACTGTTTGTTTTGTGGATTTTTTTTCCCCCAGAAGTGCAGTGAATTGTGAATTTTTTTTTCGTTCGAGTTTAATTTTTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061688_MULTIEX2-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.636 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000148608fB1345
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCTCGTCGGATCTGCAG
R:
TCTGGGAAACACTACATCCAGT
Band lengths:
251-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]