DreEX0016642 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6749937-6756629:-
Coord C1 exon
chr23:6756469-6756629
Coord A exon
chr23:6753058-6753123
Coord C2 exon
chr23:6749937-6750223
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGCCTCGTCTTTATTTCCAGGTG
3' ss Score
11.39
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ATCCGATCTTCCAGATGAAGGTGGAGGACGGGGATGCCCTGCAGGAGGTGAGTAAGCAGGAGTGGCAGGAGCAGGAGCGGGTGCTGCAGCTGGACATCAGTGTTCTCCAGTGGGTGGAGGACCTGGAGCAGAGGGTGGTCGGTGCAGACCTGCAGCTCAAG
Seq A exon
GTGGCTATTCCCAATGCAGAGAATGAAACTGAAGCTGGTCAGGAATCATCAAACACACAGTTTCAG
Seq C2 exon
ATCTTTACTCCTCCAGAACCAGACTCCACACGAGAAGACCTTCAGTATTACGAGCATGAGGTCGACCCTCGGGACGACTGGATCGTCAAGACCAAGAAGGAATGGTCAGACCTGCTGCGAGTTCCTAGCAACCCCCTGGACCTGGCCATCCTCCGGCTCGCTAACCTGGAGCGTAACATCGAGCGGCGCTTTCTGAAGGAGCCGCTGTGGAATGCAGCAGATGTGGTGCGTCTGGCACCTCTCACCCCTCCACCTGGCGGAGAGGAGGTCCCGCTTGATGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.864 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGAAGGTGGAGGACG
R:
TGTGGAGTCTGGTTCTGGAGG
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]