DreEX0016740 @ danRer10
Exon Skipping
Gene
ENSDARG00000016981 | bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:ZFIN;Acc:ZDB-GENE-080513-4]
Coordinates
chr8:15124297-15164918:-
Coord C1 exon
chr8:15164804-15164918
Coord A exon
chr8:15144369-15144428
Coord C2 exon
chr8:15124297-15124633
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTAAAACTCGTACTCACAGATT
3' ss Score
6.25
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GACTTGCTGCACCTCACAGAGATGGATCTGTTGGGTTTGGGGGTCCAAAGTCGTCTTCATCGAATCCATATTCTCTCTAGTATCCAAGTCCTGCGAGAACGTGAAACAAAACGAG
Seq A exon
ATTGCAGGAGGAGGATATTTTGGTTTTCGCTCACTTGGAAAAACTACAACCTTTAGCCAG
Seq C2 exon
AGCTGAGGATGATGGCGGAAGGGAGGTTTTCCAGTTTGCCCAGAAATATGCACGTTGGACGTCAGTGTCCGCTTGCATCCTCCATGGATCTGCTGAGCTCACGGCCGGAGCTCTCCGAGATGCCAGTCAGTGGATACCAAGGCATCTCCATCCACGGCACACTGCCTCGCAAGAAGAAGACCACCACTGGTTCCCCTGTAAAGCAATGGGAGGTGAATGGAAATGTAGGATCTTTAGCAGCGCCATACCCAGGCCGACATCGCCTGCCACCGTCACCGCTGATACACAACATCATCGAAGAACACCAGACTTTCTGCTCAGACCGGAAACAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016981_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.560
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=PD(50.0=79.5)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000110550fB1492
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTTGGGTTTGGGGGTC
R:
TGGGCAAACTGGAAAACCTCC
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]