DreEX0016741 @ danRer10
Exon Skipping
Gene
ENSDARG00000016981 | bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:ZFIN;Acc:ZDB-GENE-080513-4]
Coordinates
chr8:15164804-15192353:-
Coord C1 exon
chr8:15192170-15192353
Coord A exon
chr8:15173331-15173459
Coord C2 exon
chr8:15164804-15164918
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTAACTATTTTTTTCTTAGCCT
3' ss Score
5.05
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
TAGCGGGATTTGTCACCAGTCAGCATCATTCCGCTGTCTTCACAGGGGAGCGCAGATACAGCAGGGACAGTTCATGCAGAATGAGTGTTTGACATCTGAATGTCTACTTTCCGAGGCAGTTGGACTTAAATTGGACTGAAGAACAACACTGAAGTAGCAACAAAACGCTTGCGCGACCTCCAAG
Seq A exon
CCTTCCACACGGAGGGATACATGAAGCCCTAACTGCATCATGAAGCACATGTCCATCTCAAAATGGCTAAGTCAGCTGGGTCTACCTCAATACTGCATTCTATTTGATGAAGAATATGACGGAGTGGAG
Seq C2 exon
GACTTGCTGCACCTCACAGAGATGGATCTGTTGGGTTTGGGGGTCCAAAGTCGTCTTCATCGAATCCATATTCTCTCTAGTATCCAAGTCCTGCGAGAACGTGAAACAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016981_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
PF0053625=SAM_1=PU(46.8=96.7)
C2:
PF0053625=SAM_1=PD(50.0=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACAGGGGAGCGCAGATA
R:
GTTTCACGTTCTCGCAGGACT
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]