DreEX0017001 @ danRer10
Exon Skipping
Gene
ENSDARG00000043126 | blf
Description
bloody fingers [Source:ZFIN;Acc:ZDB-GENE-050721-1]
Coordinates
chr22:9887325-9889280:+
Coord C1 exon
chr22:9887325-9887355
Coord A exon
chr22:9887743-9887826
Coord C2 exon
chr22:9889154-9889280
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTTAAATTCATAGCAA
3' ss Score
5.48
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GCCCTTTACTAATCAAGACGGACAAATATAT
Seq A exon
CAACAGTTCCCGTTTTCACCTCATCCATCATGCTGATGTCTGCAGATCACCCGTAAACTGACACTTAAACCTCATTTTATTCAT
Seq C2 exon
AGAAGCTCCTCCCACTGCAGTTTGCCTATAAATACCGGAAGATTCTTGTCAGTCTGCAAGTGGAGGGAGAACACAGAGAAAATGAGTGATCCAGAAACCAGCATAATGGACCAAGAAGACCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043126_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTACTAATCAAGACGGACA
R:
GTCTTCTTGGTCCATTATGCTGGT
Band lengths:
151-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]