DreEX0017282 @ danRer10
Exon Skipping
Gene
ENSDARG00000022280 | brd2a
Description
bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
Coordinates
chr19:7242510-7244762:+
Coord C1 exon
chr19:7242510-7242638
Coord A exon
chr19:7243228-7243314
Coord C2 exon
chr19:7244529-7244762
Length
87 bp
Sequences
Splice sites
3' ss Seq
CATCGTTTCATTTGATACAGTTC
3' ss Score
6.07
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGGAAGATGGATCATCGGGAGTACAGAGATGCACTGCAGTTTGCTGCTGACGTCAGGCTCATGTTCTCCAACTGTTACAAGTACAATCCTCCAGATCACGATGTGGTGGCCATGGCCCGGAGACTGCAG
Seq A exon
TTCTGCTGATAAAGTTTTAATAAGAAACCAGAAAAACTGAATTGGAAAACACGAATAAATGGATTTGATGGGACCCTAAATTGAAAG
Seq C2 exon
GACGTGTTCGAGTTCCGCTTCGCCAAGATGCCTGACGAGCCCCTGGAGTCTCTCCCACCTGCATCCCTGGGCGGCGGTCTAGGCGGTGACTCCTCCTCTTCCTCCTCCTCTTCCTCCTCGTCCTCAGAGAGTGACGTGAGCAGCGAGAGTGAGAGCGAGAGCAGCCCGAGCTCTGACAGTGAGGAGGAGAGAGCGCATCGCCTGGCCCAGCTTCAGGAACAGGTGTGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022280-'12-15,'12-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.806
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000035967fB1544
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACGATGTGGTGGCCATG
R:
CACTCTCTGAGGACGAGGAGG
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]