DreEX0017297 @ danRer10
Exon Skipping
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18236568-18238701:-
Coord C1 exon
chr21:18238537-18238701
Coord A exon
chr21:18238195-18238332
Coord C2 exon
chr21:18236568-18236921
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCATTCGTTTACCCACCAGGTC
3' ss Score
7.4
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AGATTGAGAACTTGTGGTTTAATGCTGAACAGCAGATGGTTGAGCGCGCCAATGCGCATGCGCACAGCACTTCGCGTACCTCATCTCTGTGCTCCTGCCCAGCCTCCAAACAAGCGACGAGCCACTGGGATTGCCACACGGTAACTCCTTTCCTGAAGCCTTTGA
Seq A exon
GTCATTATCTGAACCTCTACTCCACCACAGCGTATCTCTGTGTATGATAGATTGACGCGAGTCAATAAAAAGAGGCTCGAGAAGGTGCAGAAACGCTAAGCGTGGATGCTAACTCTGTTAGCTGCGCGCCATCTTAAT
Seq C2 exon
GTTGAAGGTTGGGTCCTGCAATGGGATATGGTCCCTCTCAGATGACTGAAGAGCTAAAAAAACAGAAAAGCATAAAAAAGGCACTCTGAAAATAAGTCTTTTGCAGAATAAAAAAACCTTTCCCATTAAGCAGTTTTTCCCCTCTTCACCAAAATGTCAGCTGTCACTTCCGCAACCCCAGAACCTCCTGCAGCCGCAAACCCTCCTCCTCCAGAGGTGATCAACCCTACCAAACCTGGCCGCAAGACTAACCAATTGCAGTACATGCAAAATGTTGTTGTCAAGACGCTGTGGAAGCACCAGTTTGCATGGCCATTTTACCAGCCAGTTGATGCTGTTAAGCTTGGCCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.448
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(33.3=43.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCGCGTACCTCATCTC
R:
TGGTGAAGAGGGGAAAAACTGC
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]