DreEX0017305 @ danRer10
Exon Skipping
Gene
ENSDARG00000100129 | brd3b
Description
bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
Coordinates
chr5:63741416-63750806:-
Coord C1 exon
chr5:63750618-63750806
Coord A exon
chr5:63747999-63748067
Coord C2 exon
chr5:63741416-63741648
Length
69 bp
Sequences
Splice sites
3' ss Seq
CACTTTGACTTTTTTGCCAGCAA
3' ss Score
4.1
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATGTGTTTGAGATGAAATTCGCCAAGATGCCAGATGAACCGGCAGAACCATCTTCACCAAACGCTGTTTCGGCGACGGCAGTGGTGAGCAAGAGCACGGGCAGCAGCGAGAGCAGCGCAGACTCGTCCAGCTCCAGCTCCGACTCCGAGGAGGAACGGGCCACTCGGCTGGCTGAGCTCCAGGAACAG
Seq A exon
CAATTCGCTGTGGAGCGCCCCAATGGTAACAGGGCGGGGACAAAAAACGGGTGTGCCAAACGTTTTCAG
Seq C2 exon
CTGAAGGCTGTTCATGAACAGCTAGCCGCTCTGTCACAGGGTCCTGTGAGCAAACCAAAGAAAAAGAAAGAGAAGAAGGAAAAAGAGAAGAAGAAAAAGGACAAAGAGAAGGACAAAGACAAGAACAAGGTCAAGGCAGAAGAAGACAAAAAGGCCAAGTCCACGCAACCGAATAAGCAAACACCACAGAAAAAGACCTCGGCGCGAAAACCCAACAGCACATCTACTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100129_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF122803=BSMAP=PU(55.6=75.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGTGAGCAAGAGCACG
R:
TTTGGTTTGCTCACAGGACCC
Band lengths:
169-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]