DreEX0017315 @ danRer10
Exon Skipping
Gene
ENSDARG00000078904 | brd4
Description
bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
Coordinates
chr3:52886178-52938085:+
Coord C1 exon
chr3:52886178-52886326
Coord A exon
chr3:52932929-52933004
Coord C2 exon
chr3:52937716-52938085
Length
76 bp
Sequences
Splice sites
3' ss Seq
TAGGCTCTTTCTACTTACAGTTC
3' ss Score
7.16
5' ss Seq
CAGGCACGT
5' ss Score
2.9
Exon sequences
Seq C1 exon
TAGTGGCCTCTTACCGTGTGATCAGCTTGTAGCCTGCGACTGAGCTGGTGACTTCTCTCTGGACCGCAACAAAGCAGCTCTTCTGCGGAGTGCTTCCCGAGAAGATGTGCGTGCTCAGATAAGAGATTCTTCACACCAGAGACGAAAAT
Seq A exon
TTCCGTTTCTGGAGGAAAATCCAAGGTGTCACACAGCAGTTGAAATCAACCATGGAGTTTCTCTCTGCATCTTCAG
Seq C2 exon
AGAGCCCAGCGAGGAGTGCAATGGAATTAGCGGTGCTCTCTCTGTGGAGCCCGCGCCCGGCTCGAGACTGAACGAGTGGTGTCCTGCGCCACCCCCTCCCATCCCTCTGCCCGCGCTCCACCCCGCCAGTATGGGGGACGGCCTGGACGCAGTTCAGATGTCGGGGAGCAGCAGCAGTCAGGGGCAGCCCTCGTCCCAGGCCCCTTCTTCCTTCAACCCGAATCCCCCAGAAACCTCCAACCCCACCCGGCCCAAGCGCCAGACCAACCAGCTGCAGTACCTGCTGAAGGTGGTGCTGAAGAGTCTTTGGAAGCACCAGTTCGCTTGGCCTTTTCATGCTCCTGTCGACGCCGTTAAGCTAAATCTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078904_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.592
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=22.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTACCGTGTGATCAGC
R:
ATTCCATTGCACTCCTCGCTG
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]